機能開発研究グループ

研究室一覧へ

実績

2017

原著論文

Kidokoro, S., Yoneda, K., Takasaki, H., Takahashi, F., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2017) Different cold-signaling pathways function in the responses to rapid and gradual decreases in temperature. Plant Cell, 29, 760-774.
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Ariga, H., Katori, T., Tsuchimatsu, T., Hirase, T., Tajima, Y., Parker, J. E., Alcazar, R., Koornneef, M., Hoekenga, O., Lipka, A. E., Gore, M. A., Sakakibara, H., Kojima, M., Kobayashi, Y., Iuchi, S., Kobayashi, M., Shinozaki, K., Sakata, Y., Hayashi, T., Saijo, Y. and Taji, T. (2017) NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis. Nature plants, 3, 17072.
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Selvaraj, M. G., Ishizaki, T., Valencia, M., Ogawa, S., Dedicova, B., Ogata, T., Yoshiwara, K., Maruyama, K., Kusano, M., Saito, K., Takahashi, F., Shinozaki, K., Nakashima, K. and Ishitani, M. (2017) Overexpression of an Arabidopsis thaliana galactinol synthase gene improves drought tolerance in transgenic rice and increased grain yield in the field. Plant Biotech J.,
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Urano, K., Maruyama, K., Jikumaru, Y., Kamiya, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2017) Analysis of plant hormone profiles in response to moderate dehydration stress. Plant J., 90, 17-36.
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Todaka, D., Zhao, Y., Yoshida, T., Kudo, M., Kidokoro, S., Mizoi, J., Kodaira, K. S., Takebayashi, Y., Kojima, M., Sakakibara, H., Toyooka, K., Sato, M., Fernie, A. R., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2017) Temporal and spatial changes in gene expression, metabolite accumulation and phytohormone content in rice seedlings grown under drought stress conditions. Plant J., 90, 61-78.
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Maruyama, K., Ogata, T., Kanamori, N., Yoshiwara, K., Goto, S., Yamamoto, Y. Y., Tokoro, Y., Noda, C., Takaki, Y., Urawa, H., Iuchi, S., Urano, K., Yoshida, T., Sakurai, T., Kojima, M., Sakakibara, H., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2016) Design of an optimal promoter involved in the heat-induced transcriptional pathway in Arabidopsis, soybean, rice, and maize. Plant J., 89, 671-680.
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Soma, F., Mogami, J., Yoshida, T., Abekura, M., Takahashi, F., Kidokoro, S., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2017) ABA-unresponsive SnRK2 protein kinases regulate mRNA decay under osmotic stress in plants. Nature plants, 3, 16204.
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総説

Urano, K., Maruyama, K., Takahashi, F. and Shinozaki, K. (2017) Drought stress. In Brian, T., Denis, J. M., Brian, G. M. (eds.), Encyclopedia of Applied Plant Sciences 2nd Edition. Elsevier, The Netherlands, Vol. 1, pp. 8-15.
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Ohama, N., Sato, H., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2017) Transcriptional Regulatory Network of Plant Heat Stress Response. Trends Plant Sci, 22, 53-65.
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2016

原著論文

Takahagi, K., Uehara-Yamaguchi, Y., Yoshida, T., Sakurai, T., Shinozaki, K., Mochida, K. and Saisho, D. (2016) Analysis of single nucleotide polymorphisms based on RNA sequencing data of diverse bio-geographical accessions in barley. Sci Rep, 6, 33199.
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Honna, P. T., Fuganti-Pagliarini, R., Ferreira, L., Molinari, M. D. C., Marin, S. R. R., de Oliveira, M., Farias, J., Neumaier, N., Mertz-Henning, L., Kanamori, N. N., Kazuo, Takasaki, H., Urano, K., Shinozaki, K., Yamaguchi-Shinozaki, K., Desidero, J. A. and Nepomuceno, A. (2016) Molecular, physiological, and agronomical characterization, in greenhouse and in field conditions, of soybean plants genetically modified with AtGolS2 gene for drought tolerance. Moleculer Breeding,

Hoshino, A., Jayakumar, V., Nitasaka, E., Toyoda, A., Noguchi, H., Itoh, T., Shin, I. T., Minakuchi, Y., Koda, Y., Nagano, A. J., Yasugi, M., Honjo, M. N., Kudoh, H., Seki, M., Kamiya, A., Shiraki, T., Carninci, P., Asamizu, E., Nishide, H., Tanaka, S., Park, K. I., Morita, Y., Yokoyama, K., Uchiyama, I., Tanaka, Y., Tabata, S., Shinozaki, K., Hayashizaki, Y., Kohara, Y., Suzuki, Y., Sugano, S., Fujiyama, A., Iida, S. and Sakakibara, Y. (2016) Genome sequence and analysis of the Japanese morning glory Ipomoea nil. Nature Commun, 7, 13295.
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Kuromori, T., Fujita, M., Urano, K., Tanabata, T., Sugimoto, E. and Shinozaki, K. (2016) Overexpression of AtABCG25 enhances the abscisic acid signal in guard cells and improves plant water use efficiency. Plant Science, 251, 75-81.
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Kudo, M., Kidokoro, S., Yoshida, T., Mizoi, J., Todaka, D., Fernie, A. R., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2016) Double overexpression of DREB and PIF transcription factors improves drought stress tolerance and cell elongation in transgenic plants. Plant Biotech J.,, 15, 458-471
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Osakabe, Y., Watanabe, T., Sugano, S. S., Ueta, R., Ishihara, R., Shinozaki, K. and Osakabe, K. (2016) Optimization of CRISPR/Cas9 genome editing to modify abiotic stress responses in plants. Sci Rep, 6, 26685.
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Marinho, J., Kanamori, H., Ferreira, L., Fuganti-Pagliarini, R., Carvalho, J., Freitas, R., Marin, S., Rodrigues, F., Mertz-Henning, L., Farias, J., Neumaier, N., de Oliveira, M., Marcelino-Guimaraes, F., Yoshida, T., Fujita, Y., Yamaguchi-Shinozaki, K., Shinozaki, K., Nakashima, K. and Nepomuceno, A. (2016) Characterization of Molecular and Physiological Responses Under Water Deficit of Genetically Modified Soybean Plants Overexpressing the AtAREB1 Transcription Factor. Plant Molecular Biology Reporter, 34, 410-426.
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Sanchez-Rangel, D., Chavez-Martinez, A. I., Rodriguez-Hernandez, A. A., Maruri-Lopez, I., Urano, K., Shinozaki, K. and Jimenez-Bremont, J. F. (2016) Simultaneous Silencing of Two Arginine Decarboxylase Genes Alters Development in Arabidopsis. Front Plant Sci., 7, 300.
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Sato, H., Todaka, D., Kudo, M., Mizoi, J., Kidokoro, S., Zhao, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2016) The Arabidopsis transcriptional regulator DPB3-1 enhances heat stress tolerance without growth retardation in rice. Plant Biotech J., 14, 1756-1767.
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Ohama, N., Kusakabe, K., Mizoi, J., Zhao, H., Kidokoro, S., Koizumi, S., Takahashi, F., Ishida, T., Yanagisawa, S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2016) The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression. Plant Cell, 28, 181-201.
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2015

原著論文

Ramadan, A., Nemoto, K., Seki, M., Shinozaki, K., Takeda, H., Takahashi, H. and Sawasaki, T. (2015) Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes. BMC plant biology, 15, 275.
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Ito, T., Kondoh, Y., Yoshida, K., Umezawa, T., Shimizu, T., Shinozaki, K. and Osada, H. (2015) Novel Abscisic Acid Antagonists Identified with Chemical Array Screening. Chembiochem : a European journal of chemical biology, 16, 2471-2478.
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Takasaki, H., Maruyama, K., Takahashi, F., Fujita, M., Yoshida, T., Nakashima, K., Myouga, F., Toyooka, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2015) SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., in press.
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Takahashi, F., Tilbrook, J., Trittermann, C., Berger, B., Roy, S. J., Seki, M., Shinozaki, K. and Tester, M. (2015) Comparison of Leaf Sheath Transcriptome Profiles with Physiological Traits of Bread Wheat Cultivars under Salinity Stress. PloS one, 10, e0133322.
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Onda, Y., Hashimoto, K., Yoshida, T., Sakurai, T., Sawada, Y., Hirai, M. Y., Toyooka, K., Mochida, K. and Shinozaki, K. (2015) Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops. Proceedings. Biological sciences / The Royal Society, 282,
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Nemoto, K., Takemori, N., Seki, M., Shinozaki, K. and Sawasaki, T. (2015) Members of the Plant CRK-superfamily are Capable of trans-/auto-Phosphorylation of Tyrosine Residues. The Journal of biological chemistry, 290, 16665-16677.
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Higashi, Y., Okazaki, Y., Myouga, F., Shinozaki, K. and Saito, K. (2015) Landscape of the lipidome and transcriptome under heat stress in Arabidopsis thaliana. Scientific reports, 5, 10533.
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Yoshida, T., Fujita, Y., Maruyama, K., Mogami, J., Todaka, D., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2015) Four Arabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic-acid signaling in response to osmotic stress. Plant Cell Environ, 38, 35-49.
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Onda, Y., Mochida, K., Yoshida, T., Sakurai, T., Seymour, R. S., Umekawa, Y., Pirintsos, S. A., Shinozaki, K. and Ito, K. (2015) Transcriptome analysis of thermogenic Arum concinnatum reveals the molecular components of floral scent production. Scientific reports, 5, 8753.
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Kidokoro, S., Watanabe, K., Ohori, T., Moriwaki, T., Maruyama, K., Mizoi, J., Myint Phyu Sin Htwe, N., Fujita, Y., Sekita, S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2015) Soybean DREB1/CBF-type transcription factors function in heat and drought as well as cold stress-responsive gene expression. The Plant journal, 81, 505-518.
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Miyaji, T., Kuromori, T., Takeuchi, Y., Yamaji, N., Yokosho, K., Shimazawa, A., Sugimoto, E., Omote, H., Ma, J. F., Shinozaki, K. and Moriyama, Y. (2015) AtPHT4;4 is a chloroplast-localized ascorbate transporter in Arabidopsis. Nature Commun, 6, 5928.
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Mogami, J., Fujita, Y., Yoshida, T., Tsukiori, Y., Nakagami, H., Nomura, Y., Fujiwara, T., Nishida, S., Yanagisawa, S., Ishida, T., Takahashi, F., Morimoto, K., Kidokoro, S., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2015) Two Distinct Families of Protein Kinases Are Required for Plant Growth under High External Mg2+ Concentrations in Arabidopsis. Plant Physiol., 167, 1039-1057.
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Kurotani, A., Yamada, Y., Shinozaki, K., Kuroda, Y. and Sakurai, T. (2015) Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes. Plant Cell Physiol., 56, e11.
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総説

佐藤 輝、 篠崎 和子 (2015) 植物の乾燥・高温応答の解明と耐性作物の開発に向けて. バイオインダストリー, 32, 25-31.

Todaka, D., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2015) Recent advances in the dissection of drought-stress regulatory networks and strategies for development of drought-tolerant transgenic rice plants. Front Plant Sci., 6, 84.
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Fujita, M. and Shinozaki, K. (2015) Polyamine Transport Systems in Plants. Polyamines, Kusano, T. and Suzuki, H ed, Springer, 179-185.

Osakabe, Y. and Osakabe, K. (2015) Genome editing in higher plants. Targeted Genome Editing Using Engineered Nucleases: ZFNs, TALENs, and the CRISPR/Cas9 System, Yamamoto, Y., ed, Springer,

Osakabe, Y, and Osakabe, K. (2015) Genome editing with engineered nucleases in plants, Plant Cell Physiol., 56, 389-400.
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Shinozaki, K., Uemura, M., Bailey-Serres, J., Bray, E. A. and Weretilnyk, E. (2015) Responses to abiotic stress, Buchanan, B. B., Gruissem, W., Jone, R. L. (eds),Biochemistry & Molecular Biology of Plants, Wiley Blackwell,pp 1051-1099.

2014

原著論文

Goto, S., Sasakura-Shimoda, F., Suetsugu, M., Selvaraj, M., Ishitani, M., Shimono, M., Sugano, S., Matsushita, A., Tanabata, T. and Takatsuji, H. (2014) Development of disease-resistant rice by optimized expression of WRKY45. Plant Biotechnology Journal,
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Sato, H., Mizoi, J., Tanaka, H., Maruyama, K., Qin, F., Osakabe, Y., Morimoto, K., Ohori, T., Kusakabe, K., Nagata, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2014) Arabidopsis DPB3-1, a DREB2A Interactor, Specifically Enhances Heat Stress-Induced Gene Expression by Forming a Heat Stress-Specific Transcriptional Complex with NF-Y Subunits. Plant Cell, 26, 4954-4973.
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Himuro, Y., Kshiyama K., Mori, F., Gondo, T., Takahashi, F., Shinozaki, K., Kobayashi, M. and Akashi, R. (2014)Arabidopsis galactinol synthase AtGolS2 improves drought tolerance in the monocot model Brachypodium distachyon, J. plant Physiol., 171, 1127-1131.
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Koizumi, S., Ohama, N., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2014) Functional analysis of the Hikeshi-like protein and its interaction with HSP70 in Arabidopsis. Biochemical and biophysical research communications, 450, 396-400.
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Satou, M., Enoki, H., Oikawa, A., Ohta, D., Saito, K., Hachiya, T., Sakakibara, H., Kusano, M., Fukushima, A., Kobayashi, M., Nagata, N., Myouga, F., Shinozaki, K. and Motohashi, R. (2014) Integrated analysis of transcriptome and metabolome of Arabidopsis albino or pale green mutants with disrupted nuclear-encoded chloroplast proteins. Plant Mol Biol., 85, 411-428.
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Kuromori, T., Sugimoto, E. and Shinozaki, K. (2014) Inter-tissue signal transfer of abscisic acid from vascular cells to guard cells. Plant Physiol., 164, 1587-1592.
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Yamamoto, E., Iwata, H., Tanabata, T., Mizobuchi, R., Yonemaru, J., Yamamoto, T. and Yano, M. (2014) Effect of advanced intercrossing on genome structure and on the power to detect linked quantitative trait loci in a multi-parent population: a simulation study in rice. BMC genetics, 15, 50.
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Saito, A., Tanabata, S., Tanabata, T., Tajima, S., Ueno, M., Ishikawa, S., Ohtake, N., Sueyoshi, K. and Ohyama, T. (2014) Effect of Nitrate on Nodule and Root Growth of Soybean (Glycine max (L.) Merr.). International journal of molecular sciences, 15, 4464-4480.
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Okamoto, M., Higuchi-Takeuchi, M., Shimizu, M., Shinozaki, K. and Hanada, K. (2014) Substantial expression of novel small open reading frames in Oryza sativa. Plant Signal Behav., 9,
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Nakabayashi, R., Yonekura-Sakakibara, K., Urano, K., Suzuki, M., Yamada, Y., Nishizawa, T., Matsuda, F., Kojima, M., Sakakibara, H., Shinozaki, K., Michael, A. J., Tohge, T., Yamazaki, M. and Saito, K. (2014) Enhancement of oxidative and drought tolerance in Arabidopsis by overaccumulation of antioxidant flavonoids. Plant J., 77, 367-379.
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Yoshimoto, K., Shibata, M., Kondo M., Oikawa K., Sato M., Toyooka K., Shirasu K., Nishimura M., Ohsumi Y. (2014) Quality control of plant peroxisomes in organ specific manner via autophagy. J. Cell Sci. in press
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Ha, C. V., Leyva-Gonzalez, M. A., Osakabe, Y., Tran, U. T., Nishiyama, R., Watanabe, Y., Tanaka, M., Seki, M., Yamaguchi, S., Dong, N. V., Yamaguchi-Shinozaki, K., Shinozaki, K., Herrera-Estrella, L. and Tran, L. S. (2014) Positive regulatory role of strigolactone in plant responses to drought and salt stress. Proc Natl Acad Sci USA., 111, 851-856.
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Kurotani, A., Tokmakov, A. A., Kuroda, Y., Fukami, Y., Shinozaki, K. and Sakurai, T. (2014) Correlations between protein disorder and post-translational modifications in plants. Bioinformatics, in press.
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Akiyama, K., Kurotani, A., Iida, K., Kuromori, T., Shinozaki, K. and Sakurai, T. (2014) RARGE II: An Integrated Phenotype Database of Arabidopsis Mutant Traits Using a Controlled Vocabulary. Plant Cell Physiol., 55, e4.
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Nakashima, K., Jan, A., Todaka, D., Maruyama, K., Goto, S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2014) Comparative functional analysis of six drought-responsive promoters in transgenic rice. Planta, 239, 47-60.
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総説

Shinozaki, K. (2014) Interview with Kazuo Shinozaki. Trends in Plant Science, 19, 681-682.
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Fujita, M. and Shinozaki, K. (2014) Identification of polyamine transporters in plants: paraquat transport provides crucial clues. Plant Cell Physiol., .55, 855-861.
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Nakashima, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2014) The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat. Front Plant Sci., 5, 170.
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Osakabe, Y., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2014) ABA control of plant macroelement membrane transport systems in response to water deficit and high salinity. New Phytol., 202, 35-49.
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Osakabe, Y., Osakabe, K., Shinozaki, K. and Tran, L. S. (2014) Response of plants to water stress. Front Plant Sci., 5, 86.
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七夕, 小百合., 七夕, 高也., 齋藤, 明徳., 田嶋, 誠也., 渡辺, 詩織., 石川, 慶祐., 大竹, 憲邦., 末吉, 邦. and 大山, 卓爾. (2014) ダイズ根粒成長解析のためのコンピュータ画像計測方法. 土壌肥料学会誌, 85, 43-37.

Umezawa, T., Takahashi, F. and Shinozaki, K. (2014) Phosphorylation networks in the abscisic acid signaling pathway. The Enzymes "Signaling Pathways in Plants", Machida, Y., Lin, C. and Tamanoi, F ed, Elsevier, 35, 27-56.

Kuromori, T. and Shinozaki, K. (2014) ABA Transport by ABCG Transporter Proteins. Signaling and Communication in Plants - Plant ABC Transporters, Markus, G. eds, Springer, 39-47.

Kuromori, T., Mizoi, J., Umezawa, T., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2014) Stress Signaling Networks: Drought stress. Molecular Biology, Howell, S. eds, Springer, 383-409.

Maruyama, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2014) Gene expression profiling using DNA microarrays. Methods in molecular biology: Arabidopsis Protocols, Sanchez-Serrano, J. and Salinas J. ed, Springer, 1062, 381-391.

2013

原著論文

Ota, Y., Ishiguro, S., Aoyama, E., Aiba, R., Iwashiro, R., Tanabata, T., Takamure, I., Fujino, K. and Kishima, Y. (2013) Isolation of a mafor genetic interaction associated with an extreme phenotype using assorted F2 population in rice. Molecular Breeding, s11032-11013-19998-11036.
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Morimoto, K., Mizoi, J., Qin, F., Kim, J. S., Sato, H., Osakabe, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2014) Stabilization of Arabidopsis DREB2A is required but not sufficient for the induction of target genes under conditions of stress. PloS one, 8, e80457.
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Asad, J., Maruyama, K., Todaka, D., Kidokoro, S., Abo, M., Yoshimura, E., Shinozaki, K., Nakashima, K.and Yamaguchi-Shinozaki, K. (2013) OsTZF1, a CCCH-tandem zinc finger protein, confers delayed senescence and stress tolerance in rice by regulating stress-related genes, Plant Physiol., 161, 1202-1216.
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Nasr Esfahani, M., Sulieman, S., Schulze, J., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2013) Approaches for enhancement of N2 fixation efficiency of chickpea (Cicer arietinum L.) under limiting nitrogen conditions. Plant Biotechnol J.,
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Osakabe, Y., Arinaga, N., Umezawa, T., Katsura, S., Nagamachi, K., Tanaka, H., Ohiraki, H., Yamada, K., Seo, S. U., Abo, M., Yoshimura, E., Shinozaki, K.and Yamaguchi-Shinozaki, K. (2013a) Osmotic Stress Responses and Plant Growth Controlled by Potassium Transporters in Arabidopsis, Plant Cell, 25, 609-624.
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Sakurai, T., Mochida, K., Yoshida, T., Akiyama, K., Ishitani, M., Seki, M. and Shinozaki, K. (2013) Genome-wide discovery and information resource development of DNA polymorphisms in cassava. PloS one, 8, e74056.
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Liu, S., Wang, X., Wang, H., Xin, H., Yang, X., Yan, J., Li, J., Tran, L. S., Shinozaki, K., Yamaguchi-Shinozaki, K. and Qin, F. (2013) Genome-Wide Analysis of Genes and Their Association with Natural Variation in Drought Tolerance at Seedling Stage of L. PLoS Genet., 9, e1003790.
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Hashikami, H., Tanabata, T., Hirose, F., Hasanah, N., Sawase, K. and Nobuhara, H. (2013) An algorithm for recomputing concepts in microarray data analysis by biological lattice. Advanced Computational Intelligence and Intelligent Informatics, 17, 761-771
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Kawafune, K., Sato, M., Toyooka, K. and Nozaki, H. (2013) Ultrastructure of the rickettsial endosymbiont "MIDORIKO" in the green alga Carteria cerasiformis as revealed by high-pressure freezing and freeze-substitution fixation. Protoplasma, 250, 949-953.
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Sano, N., Masaki, S., Tanabata, T., Yamada, T., Hirasawa, T. and Kanekatsu, M. (2013) RNA-binding proteins associated with desiccation during seed development in rice. Biotechnology Letters, 35, 1945-1952.
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Sano, N., Masaki, S., Tanabata, T., Yamada, T., Hirasawa, T. and Kanekatsu, M. (2013) Proteomic analysis of stress-related proteins in rice seeds during the desiccation phase of grain filling. Plant Biotechnology, 30, 147-156.
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Yamauchi, D., Tamaoki, D., Hayami, M., Takeuchi, M., Karahara, I., Sato, M., Toyooka, K., Nishioka, H., Terada, Y., Uesugi, K., Takano, H., Kagoshima, Y. and Mineyuki, Y. (2013) Micro-CT observations of the 3D distribution of calcium oxalate crystals in cotyledons during maturation and germination in Lotus miyakojimae seeds. Microscopy, 62, 353-361.
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Ha, C. V., Le, D. T., Nishiyama, R., Watanabe, Y., Sulieman, S., Tran, U. T., Mochida, K., Dong, N. V., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2013) The Auxin Response Factor Transcription Factor Family in Soybean: Genome-Wide Identification and Expression Analyses During Development and Water Stress. DNA Res., 20, 511-524.
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Mizobuchi, R., Sato, H., Fukuoka, S., Tanabata, T., Tsushima, S., Imbe, T. and Yano, M. (2013) Mapping a quantitative trait locus for resistance to bacterial grain rot in rice. Rice, 6, 13.
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Behnam, B., Iuchi, S., Fujita, M., Fujita, Y., Takasaki, H., Osakabe, Y., Yamaguchi-Shinozaki, K., Kobayashi, M. and Shinozaki, K. (2013) Characterization of the Promoter Region of an Arabidopsis Gene for 9-cis-Epoxycarotenoid Dioxygenase Involved in Dehydration-Inducible Transcription. DNA Res., 20, 315-324.
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Umezawa, T., Sugiyama, N., Takahashi, F., Anderson, J. C., Ishihama, Y., Peck, S. C. and Shinozaki, K. (2013) Genetics and phosphoproteomics reveal a protein phosphorylation network in the abscisic acid signaling pathway in Arabidopsis thaliana. Science signaling, 6, rs8.
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Nishiyama, R., Watanabe, Y., Leyva-Gonzalez, M. A., Van Ha, C., Fujita, Y., Tanaka, M., Seki, M., Yamaguchi-Shinozaki, K., Shinozaki, K., Herrera-Estrella, L. and Tran, L. S. (2013) Arabidopsis AHP2, AHP3, and AHP5 histidine phosphotransfer proteins function as redundant negative regulators of drought stress response. Proc. Natl. Acad. Sci. U. S. A., 110, 4840-4845.
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Higashi, Y., Ohama, N., Ishikawa, T., Katori, T., Shimura, A., Kusakabe, K., Yamaguchi-Shinozaki, K., Ishida, J., Tanaka, M., Seki, M., Shinozaki, K., Sakata, Y., Hayashi, T. and Taji, T. (2013) HsfA1d, a Protein Identified via FOX Hunting Using Thellungiella salsuginea cDNAs Improves Heat Tolerance by Regulating Heat-Stress-Responsive Gene Expression. Mol Plant, 6, 411-422.
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Hanada, K., Higuchi-Takeuchi, M., Okamoto, M., Yoshizumi, T., Shimizu, M., Nakaminami, K., Nishi, R., Ohashi, C., Iida, K., Tanaka, M., Horii, Y., Kawashima, M., Matsui, K., Toyoda, T., Shinozaki, K., Seki, M. and Matsui, M. (2013) Small open reading frames associated with morphogenesis are hidden in plant genomes. Proc. Natl. Acad. Sci. U. S. A., 110, 2395-2400.
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Myouga, F., Akiyama, K., Tomonaga, Y., Kato, A., Sato, Y., Kobayashi, M., Nagata, N., Sakurai, T. and Shinozaki, K. (2013) The chloroplast function database II: a comprehensive collection of homozygous mutants and their phenotypic/genotypic traits for nuclear-encoded chloroplast proteins. Plant Cell Physiol., 54, e2.
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Yamasaki, K., Kigawa, T., Seki, M., Shinozaki, K.and Yokoyama, S. (2013) DNA-binding domains of plant-specific transcription factors: structure, function, and evolution, Trends in Plant Sci, 18, 267-276.
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Sakurai, T., Yamada, Y., Sawada, Y., Matsuda, F., Akiyama, K., Shinozaki, K., Hirai, M. Y. and Saito, K. (2013) PRIMe update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation. Plant Cell Physiol., 54, e5.
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Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2013) TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics. DNA Res., 20, 151-162.
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Mizoi, J., Ohori, T., Moriwaki, T., Kidokoro, S., Todaka, D., Maruyama, K., Kusakabe, K., Osakabe, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2013) GmDREB2A;2, a canonical DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN2-type transcription factor in soybean, is posttranslationally regulated and mediates dehydration-responsive element-dependent gene expression. Plant Physiol., 161, 346-361.
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Mochida, K., Uehara-Yamaguchi, Y., Takahashi, F., Yoshida, T., Sakurai, T. and Shinozaki, K. (2013) Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with pooideae sequence resources. PloS one, 8, e75265.
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Yamauchi N., G.T., Asatuma S., Toyooka K., Fujiwara T., Matsuoka K. (2013). Polarized localization and borate-dependent degradation of the Arabidopsis borate transporter BOR1 in tobacco BY-2 cells. F1000Research 2, 185.

総説

Abo, M., Osakabe, Y., Yamaguchi-Shinozaki, K. and Yoshimura, E. (2013) Measurement of potassium contents in Arabidopsis. bio-protocol,
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Mochida, K. and Shinozaki, K. (2013) Unlocking Triticeae genomics to sustainably feed the future. Plant Cell Physiol., 54, 1931-1950.
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篠崎 一雄 (2013) Hottest Researchers 2011に選考された研究家の発展を振り返るー環境ストレス応答の植物遺伝子ネットワークの解明と乾燥耐性作物への応用. 生物の科学 遺伝, 67, 701-707.

刑部 祐里子 (2013) 植物の水環境の感知メカニズム. バイオサイエンスとインダストリー, 71, 520-524.

神沼 英里., 七夕 高也., 矢野 健太郎., 清水 顕史 神沼 英里., 七夕 高也., 矢野 健太郎., 清水 顕史、岩田 洋佳 (2013) 特集記事:ワークショップ報告「育種のための情報解析ツール使い倒し塾」. 育種学研究, 15, 122-127.

Osakabe, Y., Yamaguchi-Shinozaki, K., Shinozaki, K. and Phan Tran, L. S. (2013) Sensing the environment: key roles of membrane-localized kinases in plant perception and response to abiotic stress. J Exp Bot., 64, 445-458.
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Toyooka, K.K., B-H. (2013). Reconstructing plant cells in 3D by serial section electron tomography. Methods Mol., Biol. Viktor Zarsky and Fatima Cvrckova eds, Springer, 1080, 159–170.
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刑部, 敬史. 刑部, 祐里子. (2013) 人工エンドヌクレアーゼを利用した高等植物ゲノム改変技術の新展開. 細胞工学, 32, 520-525.

2012

原著論文

Kim, J. S., Mizoi, J., Kidokoro, S., Maruyama, K., Nakajima, J., Nakashima, K., Mitsuda, N., Takiguchi, Y., Ohme-Takagi, M., Kondou, Y., Yoshizumi, T., Matsui, M., Shinozaki, K.and Yamaguchi-Shinozaki, K. (2012) Arabidopsis GROWTH-REGULATING FACTOR7 Functions as a Transcriptional Repressor of Abscisic Acid- and Osmotic Stress-Responsive Genes, Including DREB2A, Plant Cell, 24, 3393-3405.
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Le, D. T., Nishiyama, R., Watanabe, Y., Tanaka, M., Seki, M., Ham le, H., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2012) Differential Gene Expression in Soybean Leaf Tissues at Late Developmental Stages under Drought Stress Revealed by Genome-Wide Transcriptome Analysis. PloS one, 7, e49522.
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Todaka, D., Nakashima, K., Maruyama, K., Kidokoro, S., Osakabe, Y., Ito, Y., Matsukura, S., Fujita, Y., Yoshiwara, K., Ohme-Takagi, M., Kojima, M., Sakakibara, H., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2012) Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress. Proc. Natl. Acad. Sci. U. S. A., 109, 15947-15952.
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Takahashi, H., Ozawa, A., Nemoto, K., Nozawa, A., Seki, M., Shinozaki, K., Takeda, H., Endo, Y. and Sawasaki, T. (2012) Genome-wide biochemical analysis of Arabidopsis protein phosphatase using a wheat cell-free system. FEBS Lett., 586, 3134-3141.
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Yonekura-Sakakibara, K., Fukushima, A., Nakabayashi, R., Hanada, K., Matsuda, F., Sugawara, S., Inoue, E., Kuromori, T., Ito, T., Shinozaki, K., Wangwattana, B., Yamazaki, M. and Saito, K. (2012) Two glycosyltransferases involved in anthocyanin modification delineated by transcriptome independent component analysis in Arabidopsis thaliana. Plant J., 69, 154-167.
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Kobayashi, K., Narise, T., Sonoike, K., Hashimoto, H., Sato, N., Kondo, M., Nishimura, M., Sato, M., Toyooka, K., Sugimoto, K., Wada, H., Masuda, T. and Ohta, H. (2012) Role of galactolipid biosynthesis in coordinated development of photosynthetic complexes and thylakoid membranes during chloroplast biogenesis in Arabidopsis. The Plant journal : for cell and molecular biology,
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Le, D. T., Nishiyama, R., Watanabe, Y., Vankova, R., Tanaka, M., Seki, M., Ham le, H., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2012) Identification and expression analysis of cytokinin metabolic genes in soybean under normal and drought conditions in relation to cytokinin levels. PloS one, 7, e42411.
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Kanaya, T., Hase, K., Takahashi, D., Fukuda, S., Hoshino, K., Sasaki, I., Hemmi, H., Knoop, K. A., Kumar, N., Sato, M., Katsuno, T., Yokosuka, O., Toyooka, K., Nakai, K., Sakamoto, A., Kitahara, Y., Jinnohara, T., McSorley, S. J., Kaisho, T., Williams, I. R. and Ohno, H. (2012) The Ets transcription factor Spi-B is essential for the differentiation of intestinal microfold cells. Nature immunology, 13, 729-736.
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Murayama, M., Hayashi, S., Nishimura, N., Ishide, M., Kobayashi, K., Yagi, Y., Asami, T., Nakamura, T., Shinozaki, K. and Hirayama, T. (2012) Isolation of Arabidopsis ahg11, a weak ABA hypersensitive mutant defective in nad4 RNA editing. J Exp Bot., 63, 5301-5310.
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Kurusu, T., Yamanaka, T., Nakano, M., Takiguchi, A., Ogasawara, Y., Hayashi, T., Iida, K., Hanamata, S., Shinozaki, K., Iida, H. and Kuchitsu, K. (2012) Involvement of the putative Ca2+-permeable mechanosensitive channels, NtMCA1 and NtMCA2, in Ca2+ uptake, Ca2+-dependent cell proliferation and mechanical stress-induced gene expression in tobacco (Nicotiana tabacum) BY-2 cells. J. Plant Res., 125, 555-568.
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Tanaka, H., Osakabe, Y., Katsura, S., Mizuno, S., Maruyama, K., Kusakabe, K., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2012) Abiotic stress-inducible receptor-like kinases negatively control ABA signaling in Arabidopsis. Plant J., 70, 599-613.
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Utsumi, Y., Tanaka, M., Morosawa, T., Kurotani, A., Yoshida, T., Mochida, K., Matsui, A., Umemura, Y., Ishitani, M., Shinozaki, K., Sakurai, T. and Seki, M. (2012) Transcriptome analysis using a high-density oligomicroarray under drought stress in various genotypes of cassava: an important tropical crop. DNA Res., 19, 335-345.
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Fujita, M., Fujita, Y., Iuchi, S., Yamada, K., Kobayashi, Y., Urano, K., Kobayashi, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2012) Natural variation in a polyamine transporter determines paraquat tolerance in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A., 109, 6343-6347.
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Kawaguchi, S., Iida, K., Harada, E., Hanada, K., Matsui, A., Okamoto, M., Shinozaki, K., Seki, M. and Toyoda, T. (2012) Positional correlation analysis improves reconstruction of full-length transcripts and alternative isoforms from noisy array signals or short reads. Bioinformatics, 28, 929-937.
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Uraji, M., Katagiri, T., Okuma, E., Ye, W., Hossain, M. A., Masuda, C., Miura, A., Nakamura, Y., Mori, I., Shinozaki, K. and Murata, Y. (2012) Cooperative function of PLDd and PLDa1 in ABA-induced stomatal closure in Arabidopsis. Plant Physiol., 159, 450-460.
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Yamasaki, K., Kigawa, T., Watanabe, S., Inoue, M., Yamasaki, T., Seki, M., Shinozaki, K. and Yokoyama, S. (2012) Structural basis for sequence-specific DNA recognition by an Arabidopsis WRKY transcription factor. J. Biol. Chem., 287, 7683-7691.
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Kobayashi, K., Baba, S., Obayashi, T., Sato, M., Toyooka, K., Keranen, M., Aro, E. M., Fukaki, H., Ohta, H., Sugimoto, K. and Masuda, T. (2012) Regulation of root greening by light and auxin/cytokinin signaling in Arabidopsis. Plant Cell, 24, 1081-1095.
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Bunsupa, S., Katayama, K., Ikeura, E., Oikawa, A., Toyooka, K., Saito, K. and Yamazaki, M. (2012) Lysine decarboxylase catalyzes the first step of quinolizidine alkaloid biosynthesis and coevolved with alkaloid production in leguminosae. Plant Cell, 24, 1202-1216.
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Hamasaki, H., Yoshizumi, T., Takahashi, N., Higuchi, M., Kuromori, T., Imura, Y., Shimada, H. and Matsui, M. (2012) SD3, an Arabidopsis thaliana homolog of TIM21, affects intracellular ATP levels and seedling development. Mol Plant, 5, 461-471.
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Maruyama, K., Todaka, D., Mizoi, J., Yoshida, T., Kidokoro, S., Matsukura, S., Takasaki, H., Sakurai, T., Yamamoto, Y. Y., Yoshiwara, K., Kojima, M., Sakakibara, H., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2012) Identification of cis-acting promoter elements in cold- and dehydration-induced transcriptional pathways in Arabidopsis, rice, and soybean. DNA Res., 19, 37-49.
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Nishiyama, R., Le, D. T., Watanabe, Y., Matsui, A., Tanaka, M., Seki, M., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2012) Transcriptome analyses of a salt-tolerant cytokinin-deficient mutant reveal differential regulation of salt stress response by cytokinin deficiency. PloS one, 7, e32124.
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Yamaguchi, M., Takechi, K., Myouga, F., Imura, S., Sato, H., Takio, S., Shinozaki, K. and Takano, H. (2012) Loss of the Plastid Envelope Protein AtLrgB Causes Spontaneous Chlorotic Cell Death in Arabidopsis thaliana. Plant Cell Physiol., 53, 125-134.
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Kurusu, T., Nishikawa, D., Yamazaki, Y., Gotoh, M., Nakano, M., Hamada, H., Yamanaka, T., Iida, K., Nakagawa, Y., Saji, H., Shinozaki, K., Iida, H. and Kuchitsu, K. (2012) Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells. BMC plant biology, 12, 11.
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Endo, A., Tatematsu, K., Hanada, K., Duermeyer, L., Okamoto, M., Yonekura-Sakakibara, K., Saito, K., Toyoda, T., Kawakami, N., Kamiya, Y., Seki, M. and Nambara, E. (2012) Tissue-specific transcriptome analysis reveals cell wall metabolism, flavonol biosynthesis and defense responses are activated in the endosperm of germinating Arabidopsis thaliana seeds. Plant Cell Physiol., 53, 16-27.
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総説

Nakashima, K., Takasaki, H., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2012) NAC transcription factors in plant abiotic stress responses. Biochim. Biophys. Acta, 1819, 97-103.
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Choudhary, S. P., Yu, J. Q., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2012) Benefits of brassinosteroid crosstalk. Trends in Plant Sci, 17, 594-605.
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Nakaminami, K., Matsui, A., Shinozaki, K. and Seki, M. (2012) RNA regulation in plant abiotic stress responses. Biochim. Biophys. Acta, 19, 149-153.
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Ha, S., Vankova, R., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2012) Cytokinins: metabolism and function in plant adaptation to environmental stresses. Trends in Plant Sci, 17, 172-179.
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Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2012) AP2/ERF family transcription factors in plant abiotic stress responses. Biochim. Biophys. Acta, 19, 86-96.
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2011

原著論文

Yamada, K., Kanai, M., Osakabe, Y., Ohiraki, H., Shinozaki, K.and Yamaguchi-Shinozaki, K. (2011) The Monosaccharide Absorption Activity of Arabidopsis Roots Depends on the Expression Profiles of Transporter Genes under High Salinity Conditions, J. Biol. Chem.,
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Yoshida, T., Ohama, N., Nakajima, J., Kidokoro, S., Mizoi, J., Nakashima, K., Maruyama, K., Kim, J. M., Seki, M., Todaka, D., Osakabe, Y., Sakuma, Y., Schoffl, F., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2011) Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression. Mol Genet Genomics, 286, 321-332.
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Mochida, K. and Shinozaki, K. (2011) Advances in omics and bioinformatics tools for systems analyses of plant functions. Plant Cell Physiol., 52, 2017-2038.
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Yasumitsu, H., Mochida, K., Yasuda, C., Isobe, M., Kawsar, S. M., Fujii, Y., Matsumoto, R., Kanaly, R. A. and Ozeki, Y. (2011) Antiproliferative effects of galectin-1 from Rana catesbeiana eggs on human leukemia cells and its binding proteins in human cells. In Vitro Cell. Dev. Biol. Anim., 47, 728-734.
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Nishimura, T., Toyooka, K., Sato, M., Matsumoto, S., Lucas, M. M., Strnad, M., Baluska, F. and Koshiba, T. (2011) Immunohistochemical observation of indole-3-acetic acid at the IAA synthetic maize coleoptile tips. Plant Signal Behav, 6, 2013-2022.
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Kuromori, T., Ito, T., Sugimoto, E. and Shinozaki, K. (2011) Arabidopsis mutant of AtABCG26, an ABC transporter gene, is defective in pollen maturation. J. Plant Physiol., 168, 2001-2005.
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Blair, M. W., Fernandez, A. C., Ishitani, M., Moreta, D., Seki, M., Ayling, S. and Shinozaki, K. (2011) Construction and EST sequencing of full-length, drought stress cDNA libraries for common beans (Phaseolus vulgaris L.). BMC plant biology, 11, 171.
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Kim, J. S., Mizoi, J., Yoshida, T., Fujita, Y., Nakajima, J., Ohori, T., Todaka, D., Nakashima, K., Hirayama, T., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2011) An ABRE promoter sequence is involved in osmotic stress-responsive expression of the DREB2A gene, which encodes a transcription factor regulating drought-inducible genes in Arabidopsis. Plant Cell Physiol., 52, 2136-2146.
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Qin, F., Kodaira, K., Maruyama, K., Mizoi, J., Tran, L. S., Fujita, Y., Morimoto, K., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2011) SPINDLY, a Negative Regulator of GA Signaling, Is Involved in the Plant Abiotic Stress Response. Plant Physiol., 157, 1900-1913.
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Kodaira, K. S., Qin, F., Tran, L. S., Maruyama, K., Kidokoro, S., Fujita, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2011) Arabidopsis Cys2/His2 zinc-finger proteins AZF1 and AZF2 negatively regulate abscisic acid-repressive and auxin-inducible genes under abiotic stress conditions. Plant Physiol., 157, 742-756.
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Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2011) In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants. DNA Res., 18, 321-332.
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Kobayashi, M., Kouzu, N., Inami, A., Toyooka, K., Konishi, Y., Matsuoka, K. and Matoh, T. (2011) Characterization of Arabidopsis CTP:3-deoxy-D-manno-2-octulosonate cytidylyltransferase (CMP-KDO synthetase), the enzyme that activates KDO during rhamnogalacturonan II biosynthesis. Plant Cell Physiol., 52, 1832-1843.
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Kuromori, T., Sugimoto, E. and Shinozaki, K. (2011) Arabidopsis mutants of AtABCG22, an ABC transporter gene, increase water transpiration and drought susceptibility. Plant J., 67, 885-894.
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Mito, T., Seki, M., Shinozaki, K., Ohme-Takagi, M. and Matsui, K. (2011) Generation of chimeric repressors that confer salt tolerance in Arabidopsis and rice. Plant Biotechnol J., 9, 736-746.
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Nanjo, Y., Maruyama, K., Yasue, H., Yamaguchi-Shinozaki, K., Shinozaki, K. and Komatsu, S. (2011) Transcriptional responses to flooding stress in roots including hypocotyl of soybean seedlings. Plant Mol. Biol., 77, 129-144.
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Ueda, M., Matsui, K., Ishiguro, S., Kato, T., Tabata, S., Kobayashi, M., Seki, M., Shinozaki, K. and Okada, K. (2011) Arabidopsis RPT2a Encoding the 26S Proteasome Subunit is Required for Various Aspects of Root Meristem Maintenance, and Regulates Gametogenesis Redundantly with its Homolog, RPT2b. Plant Cell Physiol., 52, 1628-1640.
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Brkljacic, J., Grotewold, E., Scholl, R., Mockler, T., Garvin, D. F., Vain, P., Brutnell, T., Sibout, R., Bevan, M., Budak, H., Caicedo, A. L., Gao, C., Gu, Y., Hazen, S. P., Holt, B. F., 3rd, Hong, S. Y., Jordan, M., Manzaneda, A. J., Mitchell-Olds, T., Mochida, K., Mur, L. A., Park, C. M., Sedbrook, J., Watt, M., Zheng, S. J. and Vogel, J. P. (2011) Brachypodium as a model for the grasses: today and the future. Plant Physiol., 157, 3-13.
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Le, D. T., Nishiyama, R., Watanabe, Y., Mochida, K., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2011) Genome-Wide Survey and Expression Analysis of the Plant-Specific NAC Transcription Factor Family in Soybean During Development and Dehydration Stress. DNA Res, 18, 263-276.
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Nemoto, K., Seto, T., Takahashi, H., Nozawa, A., Seki, M., Shinozaki, K., Endo, Y. and Sawasaki, T. (2011) Autophosphorylation profiling of Arabidopsis protein kinases using the cell-free system. Phytochemistry, 72, 1136-1144.
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Akai, M., Onai, K., Kusano, M., Sato, M., Redestig, H., Toyooka, K., Morishita, M., Miyake, H., Hazama, A., Checchetto, V., Szabo, I., Matsuoka, K., Saito, K., Yasui, M., Ishiura, M. and Uozumi, N. (2011) Plasma membrane aquaporin AqpZ protein is essential for glucose metabolism during photomixotrophic growth of Synechocystis sp. PCC 6803. J. Biol. Chem., 286, 25224-25235.
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Nishiyama, R., Watanabe, Y., Fujita, Y., Le, D. T., Kojima, M., Werner, T., Vankova, R., Yamaguchi-Shinozaki, K., Shinozaki, K., Kakimoto, T., Sakakibara, H., Schmulling, T. and Tran, L. S. (2011) Analysis of cytokinin mutants and regulation of cytokinin metabolic genes reveals important regulatory roles of cytokinins in drought, salt and abscisic Acid responses, and abscisic Acid biosynthesis. Plant Cell, 23, 2169-2183.
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Mochida, K., Uehara-Yamaguchi, Y., Yoshida, T., Sakurai, T. and Shinozaki, K. (2011) Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. Plant Cell Physiol., 52, 785-803.
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Peng, L., Fukao, Y., Myouga, F., Motohashi, R., Shinozaki, K. and Shikanai, T. (2011) A chaperonin subunit with unique structures is essential for folding of a specific substrate. PLoS Biol., 9, e1001040.
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To, T. K., Kim, J. M., Matsui, A., Kurihara, Y., Morosawa, T., Ishida, J., Tanaka, M., Endo, T., Kakutani, T., Toyoda, T., Kimura, H., Yokoyama, S., Shinozaki, K. and Seki, M. (2011) Arabidopsis HDA6 regulates locus-directed heterochromatin silencing in cooperation with MET1. PLoS Genet., 7, e1002055.
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Bryant, N., Lloyd, J., Sweeney, C., Myouga, F. and Meinke, D. (2011) Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 155, 1678-1689.
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To, T. K., Nakaminami, K., Kim, J. M., Morosawa, T., Ishida, J., Tanaka, M., Yokoyama, S., Shinozaki, K. and Seki, M. (2011) Arabidopsis HDA6 is required for freezing tolerance. Biochem. Biophys. Res. Commun., 406, 414-419.
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Takahashi, F., Mizoguchi, T., Yoshida, R., Ichimura, K. and Shinozaki, K. (2011) Calmodulin-dependent activation of MAP kinase for ROS homeostasis in Arabidopsis. Mol. Cell, 41, 649-660.
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Le, D. T., Nishiyama, R., Watanabe, Y., Mochida, K., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2011) Genome-wide expression profiling of soybean two-component system genes in soybean root and shoot tissues under dehydration stress. DNA Res., 18, 17-29.
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Sakurai, T., Kondou, Y., Akiyama, K., Kurotani, A., Higuchi, M., Ichikawa, T., Kuroda, H., Kusano, M., Mori, M., Saitou, T., Sakakibara, H., Sugano, S., Suzuki, M., Takahashi, H., Takahashi, S., Takatsuji, H., Yokotani, N., Yoshizumi, T., Saito, K., Shinozaki, K., Oda, K., Hirochika, H. and Matsui, M. (2011) RiceFOX: a database of Arabidopsis mutant lines overexpressing rice full-length cDNA that contains a wide range of trait information to facilitate analysis of gene function. Plant Cell Physiol., 52, 265-273.
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Iida, K., Kawaguchi, S., Kobayashi, N., Yoshida, Y., Ishii, M., Harada, E., Hanada, K., Matsui, A., Okamoto, M., Ishida, J., Tanaka, M., Morosawa, T., Seki, M. and Toyoda, T. (2011) ARTADE2DB: improved statistical inferences for Arabidopsis gene functions and structure predictions by dynamic structure-based dynamic expression (DSDE) analyses. Plant Cell Physiol., 52, 254-264.
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Himuro, Y., Tanaka, H., Hashiguchi, M., Ichikawa, T., Nakazawa, M., Seki, M., Fujita, M., Shinozaki, K., Matsui, M., Akashi, R. and Hoffmann, F. (2011) FOX-superroots of Lotus corniculatus, overexpressing Arabidopsis full-length cDNA, show stable variations in morphological traits. J. Plant Physiol., 168, 181-187.
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Hanada, K., Sawada, Y., Kuromori, T., Klausnitzer, R., Saito, K., Toyoda, T., Shinozaki, K., Li, W. H. and Hirai, M. Y. (2011) Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. Mol. Biol. Evol., 28, 377-382.
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総説

Cramer, G. R., Urano, K., Delrot, S., Pezzotti, M. and Shinozaki, K. (2011) Effects of abiotic stress on plants: a systems biology perspective. BMC plant biology, 11, 163.
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浦野, 薫. and 篠崎, 一. (2011) メタボローム解析が解き明かす植物の乾燥ストレス応答の代謝ネットワーク. バイオサイエンスとインダストリー, 68, 398-403.

Qin, F., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2011) Achievements and challenges in understanding plant abiotic stress responses and tolerance. Plant Cell Physiol., 52, 1569-1582.
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Fujita, Y., Fujita, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2011) ABA-mediated transcriptional regulation in response to osmotic stress in plants. J. Plant Res., 124, 509-525.
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Hanada, K., Hase, T., Toyoda, T., Shinozaki, K. and Okamoto, M. (2011) Origin and evolution of genes related to ABA metabolism and its signaling pathways. J. Plant Res., 124, 455-465.
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