機能開発研究グループ

研究室一覧へ

実績

2010

原著論文

Mitsuda, N., Ikeda, M., Takada, S., Takiguchi, Y., Kondou, Y., Yoshizumi, T., Fujita, M., Shinozaki, K., Matsui, M. and Ohme-Takagi, M. (2010) Efficient yeast one-/two-hybrid screening using a library composed only of transcription factors in Arabidopsis thaliana. Plant Cell Physiol., 51, 2145-2151.
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Taji, T., Komatsu, K., Katori, T., Kawasaki, Y., Sakata, Y., Tanaka, S., Kobayashi, M., Toyoda, A., Seki, M. and Shinozaki, K. (2010) Comparative genomic analysis of 1047 completely sequenced cDNAs from an Arabidopsis-related model halophyte, Thellungiella halophila. BMC plant biology, 10, 261.
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Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2010) Genome-wide analysis of two-component systems and prediction of stress-responsive two-component system members in soybean. DNA Res., 17, 303-324.
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Tanaka, R., Rothbart, M., Oka, S., Takabayashi, A., Takahashi, K., Shibata, M., Myouga, F., Motohashi, R., Shinozaki, K., Grimm, B. and Tanaka, A. (2010) LIL3, a light-harvesting-like protein, plays an essential role in chlorophyll and tocopherol biosynthesis. Proc. Natl. Acad. Sci. U. S. A., 107, 16721-16725.
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Kuromori, T. and Shinozaki, K. (2010) ABA transport factors found in Arabidopsis ABC transporters. Plant Signal Behav, 5, 1124-1126.
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Sato, A., Toyooka, K. and Okamoto, T. (2010) Asymmetric cell division of rice zygotes located in embryo sac and produced by in vitro fertilization. Sex. Plant Reprod. 23, 211-217
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Nakagami, H., Sugiyama, N., Mochida, K., Daudi, A., Yoshida, Y., Toyoda, T., Tomita, M., Ishihama, Y. and Shirasu, K (2010) Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants. Plant Physiology, 153(3):1161-74.
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Hasegawa, T., Kubo, H., Shinozaki, K., Nowatari, M. and Ishii, M. (2010) Micro determination of cortisol and cortisone in umbilical cord blood by chemiluminescent high-performance liquid chromatography. Biomedical chromatography : BMC, 24, 613-619.
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Suetsugu, S., Toyooka, K. and Senju, Y. (2010) Subcellular membrane curvature mediated by the BAR domain superfamily proteins. Semin. Cell Dev. Biol. 21, 340-349
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Hirai, M. Y., Sawada, Y., Kanaya, S., Kuromori, T., Kobayashi, M., Klausnitzer, R., Hanada, K., Akiyama, K., Sakurai, T., Saito, K. and Shinozaki, K. (2010) Toward genome-wide metabolotyping and elucidation of metabolic system: metabolic profiling of large-scale bioresources. J. Plant Res., 123, 291-298.
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Mizoguchi, M., Umezawa, T., Nakashima, K., Kidokoro, S., Takasaki, H., Fujita, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2010) Two closely related subclass II SnRK2 protein kinases cooperatively regulate drought-inducible gene expression. Plant Cell Physiol., 51, 842-847.
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Tran LS*, Mochida K* (2010) A platform for functional prediction and comparative analyses of transcription factors of legumes and beyond. Plant Signal Behav, 5(5): 550 - 552. (*Corresponding author)
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Hirai, T., Sato, M., Toyooka, K., Sun, HJ., Yano, M. and Ezura, H. (2010) Miraculin, a taste-modifying protein is secreted into intercellular spaces by plant cells J. Plant Physiol. 167:209-215
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Okamoto, M., Tatematsu, K., Matsui, A., Morosawa, T., Ishida, J., Tanaka, M., Endo, T. A., Mochizuki, Y., Toyoda, T., Kamiya, Y., Shinozaki, K., Nambara, E. and Seki, M. (2010) Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays. Plant J., 62, 39-51.
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Osakabe, Y., Mizuno, S., Tanaka, H., Maruyama, K., Osakabe, K., Todaka, D., Fujita, Y., Kobayashi, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Overproduction of the membrane-bound receptor-like protein kinase 1, RPK1, enhances abiotic stress tolerance in Arabidopsis. J. Biol. Chem., 285, 9190-9201.
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Chikayama, E., Sekiyama, Y., Okamoto, M., Nakanishi, Y., Tsuboi, Y., Akiyama, K., Saito, K., Shinozaki, K. and Kikuchi, J. (2010) Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum. Anal. Chem., 82, 1653-1658.
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Yamanaka, T., Nakagawa, Y., Mori, K., Nakano, M., Imamura, T., Kataoka, H., Terashima, A., Iida, K., Kojima, I., Katagiri, T., Shinozaki, K. and Iida, H. (2010) MCA1 and MCA2 that mediate Ca2+ uptake have distinct and overlapping roles in Arabidopsis. Plant Physiol., 152, 1284-1296.
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Tran LS*, Mochida K* (2010) Identification and prediction of abiotic stress responsive transcription factors involved in abiotic stress signaling in soybean. Plant Signal Behav, 5(3):255-257. (*Corresponding author)
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Shimada, A., Takano, K., Shirouzu, M., Hanawa-Suetsugu, K., Terada, T., Toyooka, K., Umehara, T., Yamamoto, M., Yokoyama, S. and Suetsugu, S. (2010) Mapping of the basic amino-acid residues responsible for tubulation and cellular protrusion by the EFC/F-BAR domain of pacsin2/Syndapin II. FEBS Letter 584(6), 1111-8.
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Sasaki, T., Mori, C, I., Furuichi, T., Munemasa, S., Toyooka, K., Matsuoka, K., Murata, Y. and Yamamoto, Y. (2010) Closing plant stomata requires a homolog of an aluminum-activated malate transporter. Plant Cell Physiol. 51(3), 354-65
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Kuromori, T., Miyaji, T., Yabuuchi, H., Shimizu, H., Sugimoto, E., Kamiya, A., Moriyama, Y. and Shinozaki, K. (2010) ABC transporter AtABCG25 is involved in abscisic acid transport and responses. Proc. Natl. Acad. Sci. U. S. A., 107, 2361-2366.
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Hanada, K., Akiyama, K., Sakurai, T., Toyoda, T., Shinozaki, K. and Shiu, S. H. (2010) sORF finder: a program package to identify small open reading frames with high coding potential. Bioinformatics, 26, 399-400.
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Myouga, F., Akiyama, K., Motohashi, R., Kuromori, T., Ito, T., Iizumi, H., Ryusui, R., Sakurai, T. and Shinozaki, K. (2010) The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis. Plant J., 61, 529-542.
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Katori, T., Ikeda, A., Iuchi, S., Kobayashi, M., Shinozaki, K., Maehashi, K., Sakata, Y., Tanaka, S. and Taji, T. (2010) Dissecting the genetic control of natural variation in salt tolerance of Arabidopsis thaliana accessions. J Exp Bot., 61, 1125-1138.
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Matsukura, S., Mizoi, J., Yoshida, T., Todaka, D., Ito, Y., Maruyama, K., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Comprehensive analysis of rice DREB2-type genes that encode transcription factors involved in the expression of abiotic stress-responsive genes. Molecular genetics and genomics : MGG, 283, 185-196.
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Yoshida, T., Fujita, Y., Sayama, H., Kidokoro, S., Maruyama, K., Mizoi, J., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation. Plant J., 61, 672-685.
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Numa, H., Kim, J. M., Matsui, A., Kurihara, Y., Morosawa, T., Ishida, J., Mochizuki, Y., Kimura, H., Shinozaki, K., Toyoda, T., Seki, M., Yoshikawa, M. and Habu, Y. (2010) Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana. The EMBO journal, 29, 352-362.
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Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2010) LegumeTFDB: an integrative database of Glycine max, Lotus japonicus and Medicago truncatula transcription factors. Bioinformatics, 26, 290-291.
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Schmutz, J., Cannon, S. B., Schlueter, J., Ma, J., Mitros, T., Nelson, W., Hyten, D. L., Song, Q., Thelen, J. J., Cheng, J., Xu, D., Hellsten, U., May, G. D., Yu, Y., Sakurai, T., Umezawa, T., Bhattacharyya, M. K., Sandhu, D., Valliyodan, B., Lindquist, E., Peto, M., Grant, D., Shu, S., Goodstein, D., Barry, K., Futrell-Griggs, M., Abernathy, B., Du, J., Tian, Z., Zhu, L., Gill, N., Joshi, T., Libault, M., Sethuraman, A., Zhang, X. C., Shinozaki, K., Nguyen, H. T., Wing, R. A., Cregan, P., Specht, J., Grimwood, J., Rokhsar, D., Stacey, G., Shoemaker, R. C. and Jackson, S. A. (2010) Genome sequence of the palaeopolyploid soybean. Nature, 463, 178-183.
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Yamada, K., Osakabe, Y., Mizoi, J., Nakashima, K., Fujita, Y., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Functional analysis of an Arabidopsis thaliana abiotic stress-inducible facilitated diffusion transporter for monosaccharides. J. Biol. Chem., 285, 1138-1146.
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Betsuyaku, S., Takahashi, F., Kinoshita, A., Miwa, H., Shinozaki, K., Fukuda, H. and Sawa, S. (2010) Mitogen-Activated Protein Kinase Regulated by the CLAVATA Receptors Contributes to Shoot Apical Meristem Homeostasis. Plant Cell Physiol., 52, 14-29.
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Okuda, K., Hammani, K., Tanz, S. K., Peng, L., Fukao, Y., Myouga, F., Motohashi, R., Shinozaki, K., Small, I. and Shikanai, T. (2010) The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts. Plant J., 61, 339-349.
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総説

Umezawa, T., Nakashima, K., Miyakawa, T., Kuromori, T., Tanokura, M., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Molecular basis of the core regulatory network in aba responses: sensing, signaling and transport. Plant Cell Physiol., 51, 1821-1839.
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Tran LS*, Mochida K (2010). Functional genomics of soybean for improvement of productivity in adverse conditions. Funct Integr Genomics10: 447-462. *Corresponding author.
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Shinozaki, K. (2010) The ICAR2010 for development of Arabidopsis research beyond 2010. J. Plant Res., 123, 265-266.
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Matsui A., Ishida J., Morosawa T., Okamoto M., Kim J-M., Kurihara Y., Kawashima M., tanaka M., Kim T., Nakaminami K., Kaminuma E., Endo T., Mochizuki Y., Kawaguchi S., Kobayashi N., Shinozaki K., Toyoda T. and Seki M.; Arabidopsis tiling array analysis to identify the stress-responsive genes, Methods in Molecular Biology on Plant Stress Tolerance; Methods and Protocols, Edited by Ramanjulu Sunkar, Humana Press, 639, 141-155 (2010)
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Mochida, K. and Shinozaki, K. (2010) Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol., 51, 497-523.
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Urano, K., Kurihara, Y., Seki, M. and Shinozaki, K. (2010) 'Omics' analyses of regulatory networks in plant abiotic stress responses. Curr. Opin. Plant Biol., 13, 132-138.
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Hirayama, T. and Shinozaki, K. (2010) Research on plant abiotic stress responses in the post-genome era: past, present and future. Plant J., 61, 1041-1052.
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Kuromori, T., and Hirayama, T. Ds transposon mutant lines for saturation mutagenesis of the Arabidopsis genome. In “The Handbook of Plant Mutation Screening: Mining of Natural and Induced Alleles” Khalid Meksem, G?nter Kahl eds: WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim, 17-30.
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Tran, L. S., Shinozaki, K. and Yamaguchi-Shinozaki, K. (2010) Role of cytokinin responsive two-component system in ABA and osmotic stress signalings. Plant Signal Behav, 5, 148-150.
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Tran, L. S., Nishiyama, R., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2010) Potential utilization of NAC transcription factors to enhance abiotic stress tolerance in plants by biotechnological approach. GM crops, 1, 32-39.
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2009

原著論文

Hanada, K., Kuromori, T., Myouga, F., Toyoda, T. and Shinozaki, K. (2009) Increased expression and protein divergence in duplicate genes is associated with morphological diversification. PLoS Genet, 5, e1000781.
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Mochida, K., Yoshida, T., Sakurai, T., Yamaguchi-Shinozaki, K., Shinozaki, K. and Tran, L. S. (2009) In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean. DNA Res., 16, 353-369.
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Mochida, K., Furuta, T., Ebana, K., Shinozaki, K. and Kikuchi, J. (2009) Correlation exploration of metabolic and genomic diversity in rice. BMC Genomics, 10, 568.
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Yamaguchi, J., Tsutsui, T., Kato, W., Asada, Y., Sako, K., Sato, T., Sonoda, Y., Kidokoro, S., Yamaguchi-Shinozaki, K., Tamaoki, M., Arakawa, K., Ichikawa, T., Nakazawa, M., Seki, M., Shinozaki, K., Matsui, M. and Ikeda, A. (2009) DEAR1, a transcriptional repressor of DREB protein that mediates plant defense and freezing stress responses in Arabidopsis. J. Plant Res., 122, 633-643.
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Umezawa, T., Sugiyama, N., Mizoguchi, M., Hayashi, S., Myouga, F., Yamaguchi-Shinozaki, K., Ishihama, Y., Hirayama, T. and Shinozaki, K. (2009) Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A., 106, 17588-17593.
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Hanada, K., Kuromori, T., Myouga, F., Toyoda, T., Li, W. H. and Shinozaki, K. (2009) Evolutionary persistence of functional compensation by duplicate genes in Arabidopsis. Genome Biol Evol, 1, 409-414.
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Kurihara, Y., Kaminuma, E., Matsui, A., Kawashima, M., Tanaka, M., Morosawa, T., Ishida, J., Mochizuki, Y., Shinozaki, K., Toyoda, T. and Seki, M. (2009) Transcriptome analyses revealed diverse expression changes in ago1 and hyl1 Arabidopsis mutants. Plant Cell Physiol., 50, 1715-1720.
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Makita, Y., Kobayashi, N., Mochizuki, Y., Yoshida, Y., Asano, S., Heida, N., Deshpande, M., Bhatia, R., Matsushima, A., Ishii, M., Kawaguchi, S., Iida, K., Hanada, K., Kuromori, T., Seki, M., Shinozaki, K. and Toyoda, T. (2009) PosMed-plus: an intelligent search engine that inferentially integrates cross-species information resources for molecular breeding of plants. Plant Cell Physiol., 50, 1249-1259.
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Kuromori, T., Takahashi, S., Kondou, Y., Shinozaki, K. and Matsui, M. (2009) Phenome analysis in plant species using loss-of-function and gain-of-function mutants. Plant Cell Physiol., 50, 1215-1231.
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Mochida, K., Yoshida, T., Sakurai, T., Ogihara, Y. and Shinozaki, K. (2009) TriFLDB: a database of clustered full-length coding sequences from Triticeae with applications to comparative grass genomics. Plant Physiol., 150, 1135-1146.
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Urano, K., Maruyama, K., Ogata, Y., Morishita, Y., Takeda, M., Sakurai, N., Suzuki, H., Saito, K., Shibata, D., Kobayashi, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2009) Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J., 57, 1065-1078.
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Kurihara, Y., Matsui, A., Hanada, K., Kawashima, M., Ishida, J., Morosawa, T., Tanaka, M., Kaminuma, E., Mochizuki, Y., Matsushima, A., Toyoda, T., Shinozaki, K. and Seki, M. (2009) Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A., 106, 2453-2458.
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Matsuda, F., Yonekura-Sakakibara, K., Niida, R., Kuromori, T., Shinozaki, K. and Saito, K. (2009) MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J., 57, 555-577.
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総説

Seki, M. and Shinozaki, K. (2009) Functional genomics using RIKEN Arabidopsis thaliana full-length cDNAs. J. Plant Res., 122, 355-366.
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Shinozaki, K. and Sakakibara, H. (2009) Omics and bioinformatics: an essential toolbox for systems analyses of plant functions beyond 2010. Plant Cell Physiol., 50, 1177-1180.
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Seki, M., Kamiya, A., Carninci, P., Hayashizaki, Y. and Shinozaki, K. (2009) Generation of full-length cDNA libraries: focus on plants. Methods Mol. Biol., 533, 49-68.
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2008

原著論文

Umezawa, T., Sakurai, T., Totoki, Y., Toyoda, A., Seki, M., Ishiwata, A., Akiyama, K., Kurotani, A., Yoshida, T., Mochida, K., Kasuga, M., Todaka, D., Maruyama, K., Nakashima, K., Enju, A., Mizukado, S., Ahmed, S., Yoshiwara, K., Harada, K., Tsubokura, Y., Hayashi, M., Sato, S., Anai, T., Ishimoto, M., Funatsuki, H., Teraishi, M., Osaki, M., Shinano, T., Akashi, R., Sakaki, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2008) Sequencing and analysis of approximately 40,000 soybean cDNA clones from a full-length-enriched cDNA library. DNA Res., 15, 333-346.
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Kurihara, Y., Matsui, A., Kawashima, M., Kaminuma, E., Ishida, J., Morosawa, T., Mochizuki, Y., Kobayashi, N., Toyoda, T., Shinozaki, K. and Seki, M. (2008) Identification of the candidate genes regulated by RNA-directed DNA methylation in Arabidopsis. Biochem. Biophys. Res. Commun., 376, 553-557.
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Myouga, F., Hosoda, C., Umezawa, T., Iizumi, H., Kuromori, T., Motohashi, R., Shono, Y., Nagata, N., Ikeuchi, M. and Shinozaki, K. (2008) A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis. Plant Cell, 20, 3148-3162.
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Kim, J. M., To, T. K., Ishida, J., Morosawa, T., Kawashima, M., Matsui, A., Toyoda, T., Kimura, H., Shinozaki, K. and Seki, M. (2008) Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana. Plant Cell Physiol., 49, 1580-1588.
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Akiyama, K., Chikayama, E., Yuasa, H., Shimada, Y., Tohge, T., Shinozaki, K., Hirai, M. Y., Sakurai, T., Kikuchi, J. and Saito, K. (2008) PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol, 8, 339-345.
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Matsui, A., Ishida, J., Morosawa, T., Mochizuki, Y., Kaminuma, E., Endo, T. A., Okamoto, M., Nambara, E., Nakajima, M., Kawashima, M., Satou, M., Kim, J. M., Kobayashi, N., Toyoda, T., Shinozaki, K. and Seki, M. (2008) Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array. Plant Cell Physiol., 49, 1135-1149.
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Goda, H., Sasaki, E., Akiyama, K., Maruyama-Nakashita, A., Nakabayashi, K., Li, W., Ogawa, M., Yamauchi, Y., Preston, J., Aoki, K., Kiba, T., Takatsuto, S., Fujioka, S., Asami, T., Nakano, T., Kato, H., Mizuno, T., Sakakibara, H., Yamaguchi, S., Nambara, E., Kamiya, Y., Takahashi, H., Hirai, M. Y., Sakurai, T., Shinozaki, K., Saito, K., Yoshida, S. and Shimada, Y. (2008) The AtGenExpress hormone and chemical treatment data set: experimental design, data evaluation, model data analysis and data access. Plant J., 55, 526-542.
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Yasuda, M., Ishikawa, A., Jikumaru, Y., Seki, M., Umezawa, T., Asami, T., Maruyama-Nakashita, A., Kudo, T., Shinozaki, K., Yoshida, S. and Nakashita, H. (2008) Antagonistic interaction between systemic acquired resistance and the abscisic acid-mediated abiotic stress response in Arabidopsis. Plant Cell, 20, 1678-1692.
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Mochida, K., Saisho, D., Yoshida, T., Sakurai, T. and Shinozaki, K. (2008) TriMEDB: a database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae. BMC Plant Biol, 8, 72.
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Kuromori, T., Azumi, Y., Hayakawa, S., Kamiya, A., Imura, Y., Wada, T. and Shinozaki, K. (2008) Homologous chromosome pairing is completed in crossover defective atzip4 mutant. Biochem. Biophys. Res. Commun., 370, 98-103.
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Chikayama, E., Suto, M., Nishihara, T., Shinozaki, K. and Kikuchi, J. (2008) Systematic NMR analysis of stable isotope labeled metabolite mixtures in plant and animal systems: coarse grained views of metabolic pathways. PLoS One, 3, e3805.
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Sakai, T., Honing, H., Nishioka, M., Uehara, Y., Takahashi, M., Fujisawa, N., Saji, K., Seki, M., Shinozaki, K., Jones, M. A., Smirnoff, N., Okada, K. and Wasteneys, G. O. (2008) Armadillo repeat-containing kinesins and a NIMA-related kinase are required for epidermal-cell morphogenesis in Arabidopsis. Plant J., 53, 157-171.
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2007

原著論文

Shinozaki, K. (2007) Acceleration of soybean genomics using large collections of DNA markers for gene discovery. DNA Res., 14, 235.
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Fujita, M., Mizukado, S., Fujita, Y., Ichikawa, T., Nakazawa, M., Seki, M., Matsui, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2007) Identification of stress-tolerance-related transcription-factor genes via mini-scale Full-length cDNA Over-eXpressor (FOX) gene hunting system. Biochem. Biophys. Res. Commun., 364, 250-257.
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Sakurai, T., Plata, G., Rodriguez-Zapata, F., Seki, M., Salcedo, A., Toyoda, A., Ishiwata, A., Tohme, J., Sakaki, Y., Shinozaki, K. and Ishitani, M. (2007) Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response. BMC Plant Biol, 7, 66.
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Ito, T., Nagata, N., Yoshiba, Y., Ohme-Takagi, M., Ma, H. and Shinozaki, K. (2007) Arabidopsis MALE STERILITY1 encodes a PHD-type transcription factor and regulates pollen and tapetum development. Plant Cell, 19, 3549-3562.
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Hirayama, T. and Shinozaki, K. (2007) Perception and transduction of abscisic acid signals: keys to the function of the versatile plant hormone ABA. Trends Plant Sci, 12, 343-351.
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Tian, C., Chikayama, E., Tsuboi, Y., Kuromori, T., Shinozaki, K., Kikuchi, J. and Hirayama, T. (2007) Top-down phenomics of Arabidopsis thaliana: metabolic profiling by one- and two-dimensional nuclear magnetic resonance spectroscopy and transcriptome analysis of albino mutants. J. Biol. Chem., 282, 18532-18541.
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Iuchi, S., Koyama, H., Iuchi, A., Kobayashi, Y., Kitabayashi, S., Ikka, T., Hirayama, T., Shinozaki, K. and Kobayashi, M. (2007) Zinc finger protein STOP1 is critical for proton tolerance in Arabidopsis and coregulates a key gene in aluminum tolerance. Proc. Natl. Acad. Sci. U. S. A., 104, 9900-9905.
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Seki, M., Umezawa, T., Urano, K. and Shinozaki, K. (2007) Regulatory metabolic networks in drought stress responses. Curr. Opin. Plant Biol., 10, 296-302.
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Nishimura, N., Yoshida, T., Kitahata, N., Asami, T., Shinozaki, K. and Hirayama, T. (2007) ABA-Hypersensitive Germination1 encodes a protein phosphatase 2C, an essential component of abscisic acid signaling in Arabidopsis seed. Plant J., 50, 935-949.
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Takahashi, F., Yoshida, R., Ichimura, K., Mizoguchi, T., Seo, S., Yonezawa, M., Maruyama, K., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2007) The mitogen-activated protein kinase cascade MKK3-MPK6 is an important part of the jasmonate signal transduction pathway in Arabidopsis. Plant Cell, 19, 805-818.
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Yamamoto, Y. Y., Ichida, H., Matsui, M., Obokata, J., Sakurai, T., Satou, M., Seki, M., Shinozaki, K. and Abe, T. (2007) Identification of plant promoter constituents by analysis of local distribution of short sequences. BMC Genomics, 8, 67.
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総説

Shinozaki, K. and Yamaguchi-Shinozaki, K. (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot, 58, 221-227.
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2006

原著論文

Ichikawa, T., Nakazawa, M., Kawashima, M., Iizumi, H., Kuroda, H., Kondou, Y., Tsuhara, Y., Suzuki, K., Ishikawa, A., Seki, M., Fujita, M., Motohashi, R., Nagata, N., Takagi, T., Shinozaki, K. and Matsui, M. (2006) The FOX hunting system: an alternative gain-of-function gene hunting technique. Plant J., 48, 974-985.
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Myouga, F., Motohashi, R., Kuromori, T., Nagata, N. and Shinozaki, K. (2006) An Arabidopsis chloroplast-targeted Hsp101 homologue, APG6, has an essential role in chloroplast development as well as heat-stress response. Plant J., 48, 249-260.
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Noutoshi, Y., Kuromori, T., Wada, T., Hirayama, T., Kamiya, A., Imura, Y., Yasuda, M., Nakashita, H., Shirasu, K. and Shinozaki, K. (2006) Loss of Necrotic Spotted Lesions 1 associates with cell death and defense responses in Arabidopsis thaliana. Plant Mol. Biol., 62, 29-42.
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Kitahata, N., Han, S. Y., Noji, N., Saito, T., Kobayashi, M., Nakano, T., Kuchitsu, K., Shinozaki, K., Yoshida, S., Matsumoto, S., Tsujimoto, M. and Asami, T. (2006) A 9-cis-epoxycarotenoid dioxygenase inhibitor for use in the elucidation of abscisic acid action mechanisms. Bioorg. Med. Chem., 14, 5555-5561.
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Kuromori, T., Wada, T., Kamiya, A., Yuguchi, M., Yokouchi, T., Imura, Y., Takabe, H., Sakurai, T., Akiyama, K., Hirayama, T., Okada, K. and Shinozaki, K. (2006) A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis. Plant J., 47, 640-651.
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Fujita, M., Fujita, Y., Noutoshi, Y., Takahashi, F., Narusaka, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2006) Crosstalk between abiotic and biotic stress responses: a current view from the points of convergence in the stress signaling networks. Curr. Opin. Plant Biol., 9, 436-442.
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Matsuda, T., Kigawa, T., Koshiba, S., Inoue, M., Aoki, M., Yamasaki, K., Seki, M., Shinozaki, K. and Yokoyama, S. (2006) Cell-free synthesis of zinc-binding proteins. J Struct Funct Genomics, 7, 93-100.
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Umezawa, T., Okamoto, M., Kushiro, T., Nambara, E., Oono, Y., Seki, M., Kobayashi, M., Koshiba, T., Kamiya, Y. and Shinozaki, K. (2006) CYP707A3, a major ABA 8'-hydroxylase involved in dehydration and rehydration response in Arabidopsis thaliana. Plant J., 46, 171-182.
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Yoshida, R., Umezawa, T., Mizoguchi, T., Takahashi, S., Takahashi, F. and Shinozaki, K. (2006) The Regulatory Domain of SRK2E/OST1/SnRK2.6 Interacts with ABI1 and Integrates Abscisic Acid (ABA) and Osmotic Stress Signals Controlling Stomatal Closure in Arabidopsis. J. Biol. Chem., 281, 5310-5318.
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Umezawa, T., Fujita, M., Fujita, Y., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2006) Engineering drought tolerance in plants: discovering and tailoring genes to unlock the future. Curr. Opin. Biotechnol.,
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Oono, Y., Seki, M., Satou, M., Iida, K., Akiyama, K., Sakurai, T., Fujita, M., Yamaguchi-Shinozaki, K. and Shinozaki, K. (2006) Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays. Funct Integr Genomics, 1-23.
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Hasegawa, Y., Seki, M., Mochizuki, Y., Heida, N., Hirosawa, K., Okamoto, N., Sakurai, T., Satou, M., Akiyama, K., Iida, K., Lee, K., Kanaya, S., Demura, T., Shinozaki, K., Konagaya, A. and Toyoda, T. (2006) A flexible representation of omic knowledge for thorough analysis of microarray data. Plant Methods, 2, 5.
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総説

Taji, T., Takahashi, S. and Shinozaki, K. (2006) Inositols and their metabolites in abiotic and biotic stress responses. Subcell. Biochem., 39, 239-264.
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